odtbrain
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  • Introduction
  • Code reference
  • Examples
  • Changelog
  • Bilbliography
odtbrain
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ODTbrain provides image reconstruction algorithms for Optical Diffraction Tomography with a Born and Rytov Approximation-based Inversion to compute the refractive index (n) in 2D and in 3D. This is the documentaion of ODTbrain version 0.4.0.

Documentation¶

  • Introduction
    • Installation
    • Theoretical background
    • Fields of Application
    • How to cite
  • Code reference
    • Data conversion methods
      • Sinogram preparation
      • Translation of object function to refractive index
    • 2D inversion
      • Method summary
      • Backpropagation
      • Fourier mapping
      • Direct sum
    • 3D inversion
      • Method summary
      • Backpropagation
      • Backpropagation with tilted axis of rotation
    • 3D Apple core correction
  • Examples
    • 2D examples
      • Mie off-center cylinder
      • Mie cylinder with unevenly spaced angles
      • Mie cylinder with incomplete angular coverage
      • FDTD cell phantom
    • 3D examples
      • Missing apple core correction
      • HL60 cell
      • FDTD cell phantom
      • FDTD cell phantom with tilted axis of rotation
      • FDTD cell phantom with tilted and rolled axis of rotation
      • Mie sphere
  • Changelog
  • Bilbliography

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright 2015, Paul Müller Revision 4421085a.

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